PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083507.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 937aa    MW: 103531 Da    PI: 5.5052
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-24147248199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   ++++
  XP_011083507.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFI--RDEK 238
                     99*********************999*****9555554.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r 
  XP_011083507.1 239 SQLLLGVRRV 248
                     7789999985 PP

2Auxin_resp118.74.7e-39273356183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k+++ +++s+GmRf m+fete+ss+rr++Gt++g+sdldp+rWpnSkWrsL+
  XP_011083507.1 273 AAHAAASRSPFTIFYNPRACPSEFVIPFAKYRKTVYgTQLSIGMRFGMMFETEESSKRRYMGTITGISDLDPLRWPNSKWRSLQ 356
                     79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.19E-47134276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-41140261IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-22146247No hitNo description
SMARTSM010192.4E-23147249IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028147249IPR003340B3 DNA binding domain
PfamPF023629.2E-22147248IPR003340B3 DNA binding domain
PfamPF065079.8E-34273356IPR010525Auxin response factor
PfamPF023097.1E-9818906IPR033389AUX/IAA domain
PROSITE profilePS5174525.556820903IPR000270PB1 domain
SuperFamilySSF542773.99E-9833898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MASVEEKLKP GGLVVSGSHN LLEGMKLLKE MQDHNGVRKQ INSELWHACA GPLVTLPQVG  60
SLVYYFPQGH SEQVAVSTNR TATAQIPNYP NLPPQLLCQV HNVTLHADKD TDEIYAQMSL  120
QPVNSEKDVI PIPDFGLKPS KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPQLDYSM  180
QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSMFV GAKRLRAGDS VLFIRDEKSQ  240
LLLGVRRVNR QQAALPSSVL SADSMHIGIL AAAAHAAASR SPFTIFYNPR ACPSEFVIPF  300
AKYRKTVYGT QLSIGMRFGM MFETEESSKR RYMGTITGIS DLDPLRWPNS KWRSLQVEWD  360
EPGCGDKRNR VSPWEIETPE SLFIFPSLTA NLKRPFHSAF IGAQTEWDTL INRPFLRVPD  420
SSPGDFQCPS IPSLWSDQLM KMLVKPQRVI SPGNIAPPMQ EAKDAARQEA TSLMQSAVKQ  480
KPELITPDGF PQGEIHHITN SGILLPGKPA QTDKLENQTS SGTSSELTKV EPVLASDQLS  540
HFQTQGQCNE EKLPVKPTNP HNLINDFAGM DQNNGPLPLQ TSGWISQSRL DSHSIQTQQI  600
DPSQVETASA NALLQCPGQV EFSSYSPMYS SPSGSFRNPG SLTMIKKSDQ PSTTSCTAYT  660
VLPSVGQELW DSQFNDAKCV SQADLPILLP HQNFQYGSCG LKDLSDENHN QSDIYSCLNL  720
DGSNSGSTVI DPSVSSIVLD DFCTIKNADF HSPSDYLVGN FCSNQDVQSQ ITSVSLADSQ  780
TFSLQEYADN SGGASSSNVD FDDNNLLQHT SWQQVTPRFR TYTKIQKAGS VGRSIDVSSF  840
KTYDELRFAI ERMFGLEGLL NDLASGWKLV YVDFENDVLL VGDDPWEEFV GCVKCIRILS  900
PSEVQQMGEE GMQLLNSVGQ GVKGLTSEVG CDRDGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013815392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083507.10.0PREDICTED: auxin response factor 5
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A068UFS90.0A0A068UFS9_COFCA; Auxin response factor
STRINGSolyc04g081240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58592334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein